Examples
==================


Liquid foam flow and deformation
-----------------------------

Showing how to quantify the individual bubble properties, the flow field, and track the individual bubble. 

.. image:: Jupy_FoamQuant_files/Jupy_FoamQuant_84_1.png
   :scale: 50%

Binder version:

.. image:: https://mybinder.org/badge_logo.svg
 :target: https://mybinder.org/v2/gh/floschott/FoamQuant_binder/master?labpath=Jupy_FoamQuant.ipynb

Jupyter notebook version:

.. toctree::
   :maxdepth: 2
   
   Jupy_FoamQuant


Local stress measure
-----------------------------

Showing how to measure the individual bubble stress tensor from bubble segmented images.

.. figure:: integration.PNG
   :scale: 25%

Jupyter notebook:

.. toctree::
   :maxdepth: 2
   
   Jupy_FoamQuant_bachelor_stress

Topological rearrangement detection
-----------------------------

Showing how to detect elementary contact rearrangment (T1) from bubble segmented images.

T1 events detected in a subvolume between two time steps

.. image:: Jupy_FoamQuant_T1_detection_files/Jupy_FoamQuant_T1_detection_29_0.png

Jupyter notebook:

.. toctree::
   :maxdepth: 2
   
   Jupy_FoamQuant_T1_detection
   

In-situ bread baking
---------------------

Showing how to apply FoamQuant tools on another cellular material: bread being 3D imaged while being backed!

Jupyter example:

.. toctree::
   :maxdepth: 2
   
   Jupy_Bread